initial commit of actions

github/codeql-action-v2/.github/workflows/__all-platform-bundle.yml

@@ -0,0 +1,64 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - All-platform bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  all-platform-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: All-platform bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'true'
+          setup-kotlin: 'true'
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__analyze-ref-input.yml

@@ -0,0 +1,71 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: "PR Check - Analyze: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  analyze-ref-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+    name: "Analyze: 'ref' and 'sha' from inputs"
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__autobuild-action.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - autobuild-action
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: autobuild-action
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        env:
+      # Explicitly disable the CLR tracer.
+          COR_ENABLE_PROFILING: ''
+          COR_PROFILER: ''
+          COR_PROFILER_PATH_64: ''
+          CORECLR_ENABLE_PROFILING: ''
+          CORECLR_PROFILER: ''
+          CORECLR_PROFILER_PATH_64: ''
+      - uses: ./../action/analyze
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d csharp ]]; then
+            echo "Did not find a C# database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__autobuild-direct-tracing-with-working-dir.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing (custom working directory)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing-with-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing (custom working directory)
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          build-mode: autobuild
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__autobuild-direct-tracing.yml

@@ -0,0 +1,86 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild direct tracing
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  autobuild-direct-tracing:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Autobuild direct tracing
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        shell: bash
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check that indirect tracing is disabled
+        shell: bash
+        run: |
+          if [[ ! -z "${CODEQL_RUNNER}" ]]; then
+            echo "Expected indirect tracing to be disabled, but the" \
+              "CODEQL_RUNNER environment variable is set."
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_AUTOBUILD_BUILD_MODE_DIRECT_TRACING: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__build-mode-autobuild.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode autobuild
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: autobuild
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__build-mode-manual.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode manual
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-manual:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode manual
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: manual
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "manual" ]]; then
+            echo "Expected build mode to be 'manual' but was $build_mode"
+            exit 1
+          fi
+
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__build-mode-none.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode none
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-none:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode none
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "none" ]]; then
+            echo "Expected build mode to be 'none' but was $build_mode"
+            exit 1
+          fi
+
+  # The latest nightly supports omitting the autobuild Action when the build mode is specified.
+      - uses: ./../action/autobuild
+        if: matrix.version != 'nightly-latest'
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__build-mode-rollback.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Build mode rollback
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  build-mode-rollback:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Build mode rollback
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Java test repo configuration
+        run: |
+          mv * .github ../action/tests/multi-language-repo/
+          mv ../action/tests/multi-language-repo/.github/workflows .github
+          mv ../action/tests/java-repo/* .
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate database build mode
+        run: |
+          metadata_path="$RUNNER_TEMP/customDbLocation/java/codeql-database.yml"
+          build_mode=$(yq eval '.buildMode' "$metadata_path")
+          if [[ "$build_mode" != "autobuild" ]]; then
+            echo "Expected build mode to be 'autobuild' but was $build_mode"
+            exit 1
+          fi
+
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_DISABLE_JAVA_BUILDLESS: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__cleanup-db-cluster-dir.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Clean up database cluster directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cleanup-db-cluster-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Clean up database cluster directory
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Add a file to the database cluster directory
+        run: |
+          mkdir -p "${{ runner.temp }}/customDbLocation/javascript"
+          touch "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt"
+
+      - uses: ./../action/init
+        id: init
+        with:
+          build-mode: none
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Validate file cleaned up
+        run: |
+          if [[ -f "${{ runner.temp }}/customDbLocation/javascript/a-file-to-clean-up.txt" ]]; then
+            echo "File was not cleaned up"
+            exit 1
+          fi
+          echo "File was cleaned up"
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__config-export.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Config export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  config-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Config export
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          queries: security-extended
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: config-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check config properties appear in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+            const configSummary = run.properties.codeqlConfigSummary;
+
+            if (configSummary === undefined) {
+              core.setFailed('`codeqlConfigSummary` property not found in the SARIF run property bag.');
+            }
+            if (configSummary.disableDefaultQueries !== false) {
+              core.setFailed('`disableDefaultQueries` property incorrect: expected false, got ' +
+                `${JSON.stringify(configSummary.disableDefaultQueries)}.`);
+            }
+            const expectedQueries = [{ type: 'builtinSuite', uses: 'security-extended' }];
+            // Use JSON.stringify to deep-equal the arrays.
+            if (JSON.stringify(configSummary.queries) !== JSON.stringify(expectedQueries)) {
+              core.setFailed(`\`queries\` property incorrect: expected ${JSON.stringify(expectedQueries)}, got ` +
+                `${JSON.stringify(configSummary.queries)}.`);
+            }
+            core.info('Finished config export tests.');
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__config-input.yml

@@ -0,0 +1,82 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Config input
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  config-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Config input
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Copy queries into workspace
+        run: |
+          cp -a ../action/queries .
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: javascript
+          build-mode: none
+          config: |
+            disable-default-queries: true
+            queries:
+              - name: Run custom query
+                uses: ./queries/default-setup-environment-variables.ql
+            paths-ignore:
+              - tests
+              - lib
+
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check SARIF
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run: javascript/codeql-action/default-setup-env-vars
+          queries-not-run: javascript/codeql-action/default-setup-context-properties
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__cpp-deptrace-disabled.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - C/C++: disabling autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cpp-deptrace-disabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: disabling autoinstalling dependencies (Linux)'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: false
+      - shell: bash
+        run: |
+          if ls /usr/bin/errno; then
+            echo "C/C++ autobuild installed errno, but it should not have since auto-install dependencies is disabled."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__cpp-deptrace-enabled-on-macos.yml

@@ -0,0 +1,76 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies is skipped (macOS)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cpp-deptrace-enabled-on-macos:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies is skipped (macOS)'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - shell: bash
+        run: |
+          if ! ls /usr/bin/errno; then
+            echo "As expected, CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES is a no-op on macOS"
+          else
+            echo "CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES should not have had any effect on macOS"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__cpp-deptrace-enabled.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - C/C++: autoinstalling dependencies (Linux)'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  cpp-deptrace-enabled:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'C/C++: autoinstalling dependencies (Linux)'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          cp -a ../action/tests/cpp-autobuild autobuild-dir
+      - uses: ./../action/init
+        with:
+          languages: cpp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+        env:
+          CODEQL_EXTRACTOR_CPP_AUTOINSTALL_DEPENDENCIES: true
+      - shell: bash
+        run: |
+          if ! ls /usr/bin/errno; then
+            echo "Did not autoinstall errno"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__diagnostics-export.yml

@@ -0,0 +1,142 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Diagnostic export
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  diagnostics-export:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Diagnostic export
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Add test diagnostics
+        shell: bash
+        env:
+          CODEQL_PATH: ${{ steps.init.outputs.codeql-path }}
+        run: |
+          "$CODEQL_PATH" database add-diagnostic \
+            "$RUNNER_TEMP/codeql_databases/javascript" \
+            --file-path /path/to/file \
+            --plaintext-message "Plaintext message" \
+            --source-id "lang/diagnostics/example" \
+            --source-name "Diagnostic name" \
+            --ready-for-status-page
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: diagnostics-export-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostics appear in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            function checkStatusPageNotification(n) {
+              const expectedMessage = 'Plaintext message';
+              if (n.message.text !== expectedMessage) {
+                core.setFailed(`Expected the status page diagnostic to have the message '${expectedMessage}', but found '${n.message.text}'.`);
+              }
+              if (n.locations.length !== 1) {
+                core.setFailed(`Expected the status page diagnostic to have exactly 1 location, but found ${n.locations.length}.`);
+              }
+            }
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'lang/diagnostics/example' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+            checkStatusPageNotification(statusPageNotifications[0]);
+
+            const notifications = run.tool.driver.notifications;
+            const diagnosticNotification = notifications.filter(n =>
+              n.id === 'lang/diagnostics/example' && n.name === 'lang/diagnostics/example' &&
+                n.fullDescription.text === 'Diagnostic name'
+            );
+            if (diagnosticNotification.length !== 1) {
+              core.setFailed(
+                'Expected exactly one notification for this diagnostic in the ' +
+                  `'runs[].tool.driver.notifications[]' SARIF property, but found ` +
+                  `${diagnosticNotification.length}. All notifications: ` +
+                  `${JSON.stringify(notifications)}.`
+              );
+            }
+
+            core.info('Finished diagnostic export test');
+    env:
+      CODEQL_ACTION_EXPORT_DIAGNOSTICS: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__export-file-baseline-information.yml

@@ -0,0 +1,100 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Export file baseline information
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  export-file-baseline-information:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Export file baseline information
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: with-baseline-information-${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          expected_baseline_languages="c csharp go java kotlin javascript python ruby"
+          if [[ $RUNNER_OS == "macOS" ]]; then
+            expected_baseline_languages+=" swift"
+          fi
+
+          for lang in ${expected_baseline_languages}; do
+            rule_name="cli/expected-extracted-files/${lang}"
+            found_notification=$(jq --arg rule_name "${rule_name}" '[.runs[0].tool.driver.notifications |
+              select(. != null) | flatten | .[].id] | any(. == $rule_name)' javascript.sarif)
+            if [[ "${found_notification}" != "true" ]]; then
+              echo "Expected SARIF output to contain notification '${rule_name}', but found no such notification."
+              exit 1
+            else
+              echo "Found notification '${rule_name}'."
+            fi
+          done
+    env:
+      CODEQL_ACTION_SUBLANGUAGE_FILE_COVERAGE: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__extract-direct-to-toolcache.yml

@@ -0,0 +1,101 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Extract directly to toolcache
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  extract-direct-to-toolcache:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Extract directly to toolcache
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            fs.rmdirSync(codeqlPath, { recursive: true });
+      - name: Install @actions/tool-cache
+        run: npm install @actions/tool-cache
+      - name: Check toolcache does not contain CodeQL
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            if (allCodeqlVersions.length !== 0) {
+              throw new Error(`CodeQL should not be found in the toolcache, but found ${allCodeqlVersions}`);
+            }
+            console.log('No versions of CodeQL found in the toolcache');
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check CodeQL is installed within the toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const toolcache = require('@actions/tool-cache');
+            const allCodeqlVersions = toolcache.findAllVersions('CodeQL');
+            console.log(`Found CodeQL versions: ${allCodeqlVersions}`);
+            if (allCodeqlVersions.length === 0) {
+              throw new Error('CodeQL not found in toolcache');
+            }
+            if (allCodeqlVersions.length > 1) {
+              throw new Error('Multiple CodeQL versions found in toolcache');
+            }
+    env:
+      CODEQL_ACTION_EXTRACT_TOOLCACHE: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__extractor-ram-threads.yml

@@ -0,0 +1,78 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Extractor ram and threads options test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  extractor-ram-threads:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Extractor ram and threads options test
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: java
+          ram: 230
+          threads: 1
+      - name: Assert Results
+        shell: bash
+        run: |
+          if [ "${CODEQL_RAM}" != "230" ]; then
+            echo "CODEQL_RAM is '${CODEQL_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_RAM}" != "230" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_RAM is '${CODEQL_EXTRACTOR_JAVA_RAM}' instead of 230"
+            exit 1
+          fi
+          if [ "${CODEQL_THREADS}" != "1" ]; then
+            echo "CODEQL_THREADS is '${CODEQL_THREADS}' instead of 1"
+            exit 1
+          fi
+          if [ "${CODEQL_EXTRACTOR_JAVA_THREADS}" != "1" ]; then
+            echo "CODEQL_EXTRACTOR_JAVA_THREADS is '${CODEQL_EXTRACTOR_JAVA_THREADS}' instead of 1"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-custom-queries.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: Custom queries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-custom-queries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: 'Go: Custom queries'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          config-file: ./.github/codeql/custom-queries.yml
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-indirect-tracing-workaround-diagnostic.yml

@@ -0,0 +1,96 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when Go is changed after init step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-indirect-tracing-workaround-diagnostic:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when Go is changed after init step'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+  # Deliberately change Go after the `init` step
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '1.20'
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/go-installed-after-codeql-init' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-indirect-tracing-workaround-no-file-program.yml

@@ -0,0 +1,97 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: diagnostic when `file` is not installed'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-indirect-tracing-workaround-no-file-program:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: diagnostic when `file` is not installed'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
+      - name: Remove `file` program
+        run: |
+          echo $(which file)
+          sudo rm -rf $(which file)
+          echo $(which file)
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Check diagnostic appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/go.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const statusPageNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'go/workflow/file-program-unavailable' && n.properties?.visibility?.statusPage
+            );
+            if (statusPageNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one status page reporting descriptor for this diagnostic in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${statusPageNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-indirect-tracing-workaround.yml

@@ -0,0 +1,92 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: workaround for indirect tracing'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-indirect-tracing-workaround:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: 'Go: workaround for indirect tracing'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+      # We need a Go version that ships with statically linked binaries on Linux
+          go-version: '>=1.21.0'
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          if [[ -z "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "Expected the workaround for indirect tracing of static binaries to trigger, but the" \
+              "CODEQL_ACTION_GO_BINARY environment variable is not set."
+            exit 1
+          fi
+          if [[ ! -f "${CODEQL_ACTION_GO_BINARY}" ]]; then
+            echo "CODEQL_ACTION_GO_BINARY is set, but the corresponding script does not exist."
+            exit 1
+          fi
+
+
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-tracing-autobuilder.yml

@@ -0,0 +1,109 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with autobuilder step'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-tracing-autobuilder:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with autobuilder step'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.23.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          if [[ "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" != true ]]; then
+            echo "Expected the Go autobuilder to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was not true."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-tracing-custom-build-steps.yml

@@ -0,0 +1,113 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with custom build steps'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-tracing-custom-build-steps:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with custom build steps'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.23.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: go build main.go
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          # Once we start running Bash 4.2 in all environments, we can replace the
+          # `! -z` flag with the more elegant `-v` which confirms that the variable
+          # is actually unset and not potentially set to a blank value.
+          if [[ ! -z "${CODEQL_ACTION_DID_AUTOBUILD_GOLANG}" ]]; then
+            echo "Expected the Go autobuilder not to be run, but the" \
+              "CODEQL_ACTION_DID_AUTOBUILD_GOLANG environment variable was set."
+            exit 1
+          fi
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__go-tracing-legacy-workflow.yml

@@ -0,0 +1,103 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Go: tracing with legacy workflow'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  go-tracing-legacy-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: 'Go: tracing with legacy workflow'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ~1.23.0
+      # to avoid potentially misleading autobuilder results where we expect it to download
+      # dependencies successfully, but they actually come from a warm cache
+          cache: false
+      - uses: ./../action/init
+        with:
+          languages: go
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+      - shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d go ]]; then
+            echo "Did not find a Go database"
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__init-with-registries.yml

@@ -0,0 +1,134 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Download using registries'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  init-with-registries:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: 'Packaging: Download using registries'
+    permissions:
+      contents: read
+      packages: read
+
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Init with registries
+        uses: ./../action/init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          config-file: ./.github/codeql/codeql-config-registries.yml
+          languages: javascript
+          registries: |
+            - url: "https://ghcr.io/v2/"
+              packages: "*/*"
+              token: "${{ secrets.GITHUB_TOKEN }}"
+
+      - name: Verify packages installed
+        shell: bash
+        run: |
+          PRIVATE_PACK="$HOME/.codeql/packages/codeql-testing/private-pack"
+          CODEQL_PACK1="$HOME/.codeql/packages/codeql-testing/codeql-pack1"
+
+          if [[ -d $PRIVATE_PACK ]]
+          then
+              echo "$PRIVATE_PACK was installed."
+          else
+              echo "::error $PRIVATE_PACK pack was not installed."
+              exit 1
+          fi
+
+          if [[ -d $CODEQL_PACK1 ]]
+          then
+              echo "$CODEQL_PACK1 was installed."
+          else
+              echo "::error $CODEQL_PACK1 pack was not installed."
+              exit 1
+          fi
+
+      - name: Verify qlconfig.yml file was created
+        shell: bash
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          echo "Expected qlconfig.yml file to be created at $QLCONFIG_PATH"
+          if [[ -f $QLCONFIG_PATH ]]
+          then
+              echo "qlconfig.yml file was created."
+          else
+              echo "::error qlconfig.yml file was not created."
+              exit 1
+          fi
+
+      - name: Verify contents of qlconfig.yml
+    # yq is not available on windows
+        if: runner.os != 'Windows'
+        shell: bash
+        run: |
+          QLCONFIG_PATH=$RUNNER_TEMP/qlconfig.yml
+          cat $QLCONFIG_PATH | yq -e '.registries[] | select(.url == "https://ghcr.io/v2/") | select(.packages == "*/*")'
+          if [[ $? -eq 0 ]]
+          then
+              echo "Registry was added to qlconfig.yml file."
+          else
+              echo "::error Registry was not added to qlconfig.yml file."
+              echo "Contents of qlconfig.yml file:"
+              cat $QLCONFIG_PATH
+              exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__javascript-source-root.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Custom source root
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  javascript-source-root:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Custom source root
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Move codeql-action
+        shell: bash
+        run: |
+          mkdir ../new-source-root
+          mv * ../new-source-root
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          source-root: ../new-source-root
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+      - name: Assert database exists
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d javascript ]]; then
+            echo "Did not find a JavaScript database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__job-run-uuid-sarif.yml

@@ -0,0 +1,79 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Job run UUID added to SARIF
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  job-run-uuid-sarif:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Job run UUID added to SARIF
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-${{ matrix.version }}.sarif.json
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          actual=$(jq -r '.runs[0].properties.jobRunUuid' javascript.sarif)
+          if [[ "$actual" != "$JOB_RUN_UUID" ]]; then
+            echo "Expected SARIF output to contain job run UUID '$JOB_RUN_UUID', but found '$actual'."
+            exit 1
+          else
+            echo "Found job run UUID '$actual'."
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__language-aliases.yml

@@ -0,0 +1,69 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Language aliases
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  language-aliases:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Language aliases
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: C#,java-kotlin,swift,typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Check languages
+        run: |
+          expected_languages="csharp,java,swift,javascript"
+          actual_languages=$(jq -r '.languages | join(",")' "$RUNNER_TEMP"/config)
+
+          if [ "$expected_languages" != "$actual_languages" ]; then
+            echo "Resolved languages did not match expected list. " \
+              "Expected languages: $expected_languages. Actual languages: $actual_languages."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__multi-language-autodetect.yml

@@ -0,0 +1,158 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Multi-language repository
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  multi-language-autodetect:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: stable-v2.15.5
+          - os: ubuntu-latest
+            version: stable-v2.15.5
+          - os: macos-latest
+            version: stable-v2.16.6
+          - os: ubuntu-latest
+            version: stable-v2.16.6
+          - os: macos-latest
+            version: stable-v2.17.6
+          - os: ubuntu-latest
+            version: stable-v2.17.6
+          - os: macos-latest
+            version: stable-v2.18.4
+          - os: ubuntu-latest
+            version: stable-v2.18.4
+          - os: macos-latest
+            version: stable-v2.19.4
+          - os: ubuntu-latest
+            version: stable-v2.19.4
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: nightly-latest
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Multi-language repository
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+          languages: ${{ runner.os == 'Linux' && 'cpp,csharp,go,java,javascript,python,ruby'
+            || '' }}
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - uses: ./../action/.github/actions/setup-swift
+        if: runner.os == 'macOS'
+        with:
+          codeql-path: ${{ steps.init.outputs.codeql-path }}
+
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+
+      - name: Check language autodetect for all languages excluding Swift
+        shell: bash
+        run: |
+          CPP_DB=${{ fromJson(steps.analysis.outputs.db-locations).cpp }}
+          if [[ ! -d $CPP_DB ]] || [[ ! $CPP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for CPP, or created it in the wrong location."
+            exit 1
+          fi
+          CSHARP_DB=${{ fromJson(steps.analysis.outputs.db-locations).csharp }}
+          if [[ ! -d $CSHARP_DB ]] || [[ ! $CSHARP_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for C Sharp, or created it in the wrong location."
+            exit 1
+          fi
+          GO_DB=${{ fromJson(steps.analysis.outputs.db-locations).go }}
+          if [[ ! -d $GO_DB ]] || [[ ! $GO_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Go, or created it in the wrong location."
+            exit 1
+          fi
+          JAVA_DB=${{ fromJson(steps.analysis.outputs.db-locations).java }}
+          if [[ ! -d $JAVA_DB ]] || [[ ! $JAVA_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Java, or created it in the wrong location."
+            exit 1
+          fi
+          JAVASCRIPT_DB=${{ fromJson(steps.analysis.outputs.db-locations).javascript }}
+          if [[ ! -d $JAVASCRIPT_DB ]] || [[ ! $JAVASCRIPT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Javascript, or created it in the wrong location."
+            exit 1
+          fi
+          PYTHON_DB=${{ fromJson(steps.analysis.outputs.db-locations).python }}
+          if [[ ! -d $PYTHON_DB ]] || [[ ! $PYTHON_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Python, or created it in the wrong location."
+            exit 1
+          fi
+          RUBY_DB=${{ fromJson(steps.analysis.outputs.db-locations).ruby }}
+          if [[ ! -d $RUBY_DB ]] || [[ ! $RUBY_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Ruby, or created it in the wrong location."
+            exit 1
+          fi
+
+      - name: Check language autodetect for Swift on macOS
+        if: runner.os == 'macOS'
+        shell: bash
+        run: |
+          SWIFT_DB=${{ fromJson(steps.analysis.outputs.db-locations).swift }}
+          if [[ ! -d $SWIFT_DB ]] || [[ ! $SWIFT_DB == ${{ runner.temp }}/customDbLocation/* ]]; then
+            echo "Did not create a database for Swift, or created it in the wrong location."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__packaging-codescanning-config-inputs-js.yml

@@ -0,0 +1,106 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input passed to the CLI'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  packaging-codescanning-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input passed to the CLI'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__packaging-config-inputs-js.yml

@@ -0,0 +1,106 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config and input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  packaging-config-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: 'Packaging: Config and input'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__packaging-config-js.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Config file'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  packaging-config-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: 'Packaging: Config file'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging.yml
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__packaging-inputs-js.yml

@@ -0,0 +1,105 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: 'PR Check - Packaging: Action input'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  packaging-inputs-js:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: 'Packaging: Action input'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging2.yml
+          languages: javascript
+          packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2, codeql-testing/codeql-pack3:other-query.ql
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+
+      - name: Check results
+        uses: ./../action/.github/actions/check-sarif
+        with:
+          sarif-file: ${{ runner.temp }}/results/javascript.sarif
+          queries-run:
+            javascript/example/empty-or-one-block,javascript/example/empty-or-one-block,javascript/example/other-query-block,javascript/example/two-block
+          queries-not-run: foo,bar
+
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__remote-config.yml

@@ -0,0 +1,66 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Remote config file
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  remote-config:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Remote config file
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__resolve-environment-action.yml

@@ -0,0 +1,95 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Resolve environment
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  resolve-environment-action:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+          - os: windows-latest
+            version: nightly-latest
+    name: Resolve environment
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: go,javascript-typescript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Resolve environment for Go
+        uses: ./../action/resolve-environment
+        id: resolve-environment-go
+        with:
+          language: go
+
+      - name: Fail if Go configuration missing
+        if: (!fromJSON(steps.resolve-environment-go.outputs.environment).configuration.go)
+        run: exit 1
+
+      - name: Resolve environment for JavaScript/TypeScript
+        uses: ./../action/resolve-environment
+        id: resolve-environment-js
+        with:
+          language: javascript-typescript
+
+      - name: Fail if JavaScript/TypeScript configuration present
+        if:
+          fromJSON(steps.resolve-environment-js.outputs.environment).configuration.javascript
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__rubocop-multi-language.yml

@@ -0,0 +1,74 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - RuboCop multi-language
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  rubocop-multi-language:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+    name: RuboCop multi-language
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Set up Ruby
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: 2.6
+      - name: Install Code Scanning integration
+        shell: bash
+        run: bundle add code-scanning-rubocop --version 0.3.0 --skip-install
+      - name: Install dependencies
+        shell: bash
+        run: bundle install
+      - name: RuboCop run
+        shell: bash
+        run: |
+          bash -c "
+            bundle exec rubocop --require code_scanning --format CodeScanning::SarifFormatter -o rubocop.sarif
+            [[ $? -ne 2 ]]
+          "
+      - uses: ./../action/upload-sarif
+        with:
+          sarif_file: rubocop.sarif
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__ruby.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Ruby analysis
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  ruby:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Ruby analysis
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          RUBY_DB="${{ fromJson(steps.analysis.outputs.db-locations).ruby }}"
+          if [[ ! -d "$RUBY_DB" ]]; then
+            echo "Did not create a database for Ruby."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__split-workflow.yml

@@ -0,0 +1,104 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Split workflow
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  split-workflow:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+          - os: macos-latest
+            version: nightly-latest
+    name: Split workflow
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          config-file: .github/codeql/codeql-config-packaging3.yml
+          packs: +codeql-testing/codeql-pack1@1.0.0
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        with:
+          skip-queries: true
+          output: ${{ runner.temp }}/results
+          upload-database: false
+
+      - name: Assert No Results
+        shell: bash
+        run: |
+          if [ "$(ls -A $RUNNER_TEMP/results)" ]; then
+            echo "Expected results directory to be empty after skipping query execution!"
+            exit 1
+          fi
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Assert Results
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/results"
+          # We should have 4 hits from these rules
+          EXPECTED_RULES="javascript/example/empty-or-one-block javascript/example/empty-or-one-block javascript/example/other-query-block javascript/example/two-block"
+
+          # use tr to replace newlines with spaces and xargs to trim leading and trailing whitespace
+          RULES="$(cat javascript.sarif | jq -r '.runs[0].results[].ruleId' | sort | tr "\n\r" " " | xargs)"
+          echo "Found matching rules '$RULES'"
+          if [ "$RULES" != "$EXPECTED_RULES" ]; then
+            echo "Did not match expected rules '$EXPECTED_RULES'."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__start-proxy.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Start proxy
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  start-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Start proxy
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          languages: csharp
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+      - name: Setup proxy for registries
+        id: proxy
+        uses: ./../action/start-proxy
+        with:
+          registry_secrets: '[{ "type": "nuget_feed", "url": "https://api.nuget.org/v3/index.json"
+            }]'
+
+      - name: Print proxy outputs
+        run: |
+          echo "${{ steps.proxy.outputs.proxy_host }}"
+          echo "${{ steps.proxy.outputs.proxy_port }}"
+          echo "${{ steps.proxy.outputs.proxy_urls }}"
+
+      - name: Fail if proxy outputs are not set
+        if: (!steps.proxy.outputs.proxy_host) || (!steps.proxy.outputs.proxy_port)
+          || (!steps.proxy.outputs.proxy_ca_certificate) || (!steps.proxy.outputs.proxy_urls)
+        run: exit 1
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__submit-sarif-failure.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Submit SARIF after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  submit-sarif-failure:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: default
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Submit SARIF after failure
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: actions/checkout@v4
+      - uses: ./init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - name: Fail
+    # We want this job to pass if the Action correctly uploads the SARIF file for
+    # the failed run.
+    # Setting this step to continue on error means that it is marked as completing
+    # successfully, so will not fail the job.
+        continue-on-error: true
+        run: exit 1
+      - uses: ./analyze
+    # In a real workflow, this step wouldn't run. Since we used `continue-on-error`
+    # above, we manually disable it with an `if` condition.
+        if: false
+        with:
+          category: /test-codeql-version:${{ matrix.version }}
+    env:
+  # Internal-only environment variable used to indicate that the post-init Action
+  # should expect to upload a SARIF file for the failed run.
+      CODEQL_ACTION_EXPECT_UPLOAD_FAILED_SARIF: true
+  # Make sure the uploading SARIF files feature is enabled.
+      CODEQL_ACTION_UPLOAD_FAILED_SARIF: true
+  # Upload the failed SARIF file as an integration test of the API endpoint.
+      CODEQL_ACTION_TEST_MODE: false
+  # Mark telemetry for this workflow so it can be treated separately.
+      CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
+

github/codeql-action-v2/.github/workflows/__swift-autobuild.yml

@@ -0,0 +1,80 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Swift analysis using autobuild
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  swift-autobuild:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using autobuild
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          build-mode: autobuild
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
+      - name: Check working directory
+        shell: bash
+        run: pwd
+      - uses: ./../action/autobuild
+        timeout-minutes: 30
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__swift-custom-build.yml

@@ -0,0 +1,85 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Swift analysis using a custom build command
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  swift-custom-build:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: macos-latest
+            version: default
+          - os: macos-latest
+            version: nightly-latest
+    name: Swift analysis using a custom build command
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          languages: swift
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/.github/actions/setup-swift
+        with:
+          codeql-path: ${{steps.init.outputs.codeql-path}}
+      - name: Check working directory
+        shell: bash
+        run: pwd
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - name: Check database
+        shell: bash
+        run: |
+          SWIFT_DB="${{ fromJson(steps.analysis.outputs.db-locations).swift }}"
+          if [[ ! -d "$SWIFT_DB" ]]; then
+            echo "Did not create a database for Swift."
+            exit 1
+          fi
+    env:
+      DOTNET_GENERATE_ASPNET_CERTIFICATE: 'false'
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__test-autobuild-working-dir.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Autobuild working directory
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-autobuild-working-dir:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+    name: Autobuild working directory
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Test setup
+        shell: bash
+        run: |
+          # Make sure that Gradle build succeeds in autobuild-dir ...
+          cp -a ../action/tests/java-repo autobuild-dir
+          # ... and fails if attempted in the current directory
+          echo > build.gradle
+      - uses: ./../action/init
+        with:
+          languages: java
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/autobuild
+        with:
+          working-directory: autobuild-dir
+      - uses: ./../action/analyze
+      - name: Check database
+        shell: bash
+        run: |
+          cd "$RUNNER_TEMP/codeql_databases"
+          if [[ ! -d java ]]; then
+            echo "Did not find a Java database"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__test-local-codeql.yml

@@ -0,0 +1,70 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Local CodeQL bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-local-codeql:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Local CodeQL bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Fetch a CodeQL bundle
+        shell: bash
+        env:
+          CODEQL_URL: ${{ steps.prepare-test.outputs.tools-url }}
+        run: |
+          wget "$CODEQL_URL"
+      - id: init
+        uses: ./../action/init
+        with:
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ./codeql-bundle-linux64.tar.zst
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__test-proxy.yml

@@ -0,0 +1,81 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Proxy test
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-proxy:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Proxy test
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+  # These steps are required to initialise the `gh` cli in a container that doesn't
+  # come pre-installed with it. The reason for that is that this is later
+  # needed by the `prepare-test` workflow to find the latest release of CodeQL.
+      - name: Set up GitHub CLI
+        run: |
+          apt update
+          apt install -y curl libreadline8 gnupg2 software-properties-common zstd
+          curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | dd of=/usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-key add /usr/share/keyrings/githubcli-archive-keyring.gpg
+          apt-add-repository https://cli.github.com/packages
+          apt install -y gh
+        env: {}
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'false'
+      - uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+    env:
+      https_proxy: http://squid-proxy:3128
+      CODEQL_ACTION_TEST_MODE: true
+    container:
+      image: ubuntu:22.04
+    services:
+      squid-proxy:
+        image: ubuntu/squid:latest
+        ports:
+          - 3128:3128

github/codeql-action-v2/.github/workflows/__unset-environment.yml

@@ -0,0 +1,111 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Test unsetting environment variables
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  unset-environment:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: ubuntu-latest
+            version: nightly-latest
+    name: Test unsetting environment variables
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        id: init
+        with:
+          db-location: ${{ runner.temp }}/customDbLocation
+      # Swift is not supported on Ubuntu so we manually exclude it from the list here
+          languages: cpp,csharp,go,java,javascript,python,ruby
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: '>=1.21.0'
+      - name: Build code
+        shell: bash
+        run: env -i PATH="$PATH" HOME="$HOME" ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        with:
+          upload-database: false
+      - shell: bash
+        run: |
+          CPP_DB="${{ fromJson(steps.analysis.outputs.db-locations).cpp }}"
+          if [[ ! -d "$CPP_DB" ]] || [[ ! "$CPP_DB" == "${RUNNER_TEMP}/customDbLocation/cpp" ]]; then
+            echo "::error::Did not create a database for CPP, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/cpp' but actual was '${CPP_DB}'"
+            exit 1
+          fi
+          CSHARP_DB="${{ fromJson(steps.analysis.outputs.db-locations).csharp }}"
+          if [[ ! -d "$CSHARP_DB" ]] || [[ ! "$CSHARP_DB" == "${RUNNER_TEMP}/customDbLocation/csharp" ]]; then
+            echo "::error::Did not create a database for C Sharp, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/csharp' but actual was '${CSHARP_DB}'"
+            exit 1
+          fi
+          GO_DB="${{ fromJson(steps.analysis.outputs.db-locations).go }}"
+          if [[ ! -d "$GO_DB" ]] || [[ ! "$GO_DB" == "${RUNNER_TEMP}/customDbLocation/go" ]]; then
+            echo "::error::Did not create a database for Go, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/go' but actual was '${GO_DB}'"
+            exit 1
+          fi
+          JAVA_DB="${{ fromJson(steps.analysis.outputs.db-locations).java }}"
+          if [[ ! -d "$JAVA_DB" ]] || [[ ! "$JAVA_DB" == "${RUNNER_TEMP}/customDbLocation/java" ]]; then
+            echo "::error::Did not create a database for Java, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/java' but actual was '${JAVA_DB}'"
+            exit 1
+          fi
+          JAVASCRIPT_DB="${{ fromJson(steps.analysis.outputs.db-locations).javascript }}"
+          if [[ ! -d "$JAVASCRIPT_DB" ]] || [[ ! "$JAVASCRIPT_DB" == "${RUNNER_TEMP}/customDbLocation/javascript" ]]; then
+            echo "::error::Did not create a database for Javascript, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/javascript' but actual was '${JAVASCRIPT_DB}'"
+            exit 1
+          fi
+          PYTHON_DB="${{ fromJson(steps.analysis.outputs.db-locations).python }}"
+          if [[ ! -d "$PYTHON_DB" ]] || [[ ! "$PYTHON_DB" == "${RUNNER_TEMP}/customDbLocation/python" ]]; then
+            echo "::error::Did not create a database for Python, or created it in the wrong location." \
+              "Expected location was '${RUNNER_TEMP}/customDbLocation/python' but actual was '${PYTHON_DB}'"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__upload-ref-sha-input.yml

@@ -0,0 +1,77 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: "PR Check - Upload-sarif: 'ref' and 'sha' from inputs"
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-ref-sha-input:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: default
+          - os: macos-latest
+            version: default
+          - os: windows-latest
+            version: default
+    name: "Upload-sarif: 'ref' and 'sha' from inputs"
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          languages: cpp,csharp,java,javascript,python
+          config-file: ${{ github.repository }}/tests/multi-language-repo/.github/codeql/custom-queries.yml@${{
+            github.sha }}
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+  # Generate some SARIF we can upload with the upload-sarif step
+      - uses: ./../action/analyze
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+          upload: never
+      - uses: ./../action/upload-sarif
+        with:
+          ref: refs/heads/main
+          sha: 5e235361806c361d4d3f8859e3c897658025a9a2
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__with-checkout-path.yml

@@ -0,0 +1,119 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Use a custom `checkout_path`
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  with-checkout-path:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            version: linked
+          - os: macos-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Use a custom `checkout_path`
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Delete original checkout
+        shell: bash
+        run: |
+          # delete the original checkout so we don't accidentally use it.
+          # Actions does not support deleting the current working directory, so we
+          # delete the contents of the directory instead.
+          rm -rf ./* .github .git
+  # Check out the actions repo again, but at a different location.
+  # choose an arbitrary SHA so that we can later test that the commit_oid is not from main
+      - uses: actions/checkout@v4
+        with:
+          ref: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+          path: x/y/z/some-path
+
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      # it's enough to test one compiled language and one interpreted language
+          languages: csharp,javascript
+          source-root: x/y/z/some-path/tests/multi-language-repo
+
+      - name: Build code
+        shell: bash
+        working-directory: x/y/z/some-path/tests/multi-language-repo
+        run: |
+          ./build.sh
+
+      - uses: ./../action/analyze
+        with:
+          checkout_path: x/y/z/some-path/tests/multi-language-repo
+          ref: v1.1.0
+          sha: 474bbf07f9247ffe1856c6a0f94aeeb10e7afee6
+
+      - name: Verify SARIF after upload
+        shell: bash
+        run: |
+          EXPECTED_COMMIT_OID="474bbf07f9247ffe1856c6a0f94aeeb10e7afee6"
+          EXPECTED_REF="v1.1.0"
+          EXPECTED_CHECKOUT_URI_SUFFIX="/x/y/z/some-path/tests/multi-language-repo"
+
+          ACTUAL_COMMIT_OID="$(cat "$RUNNER_TEMP/payload.json" | jq -r .commit_oid)"
+          ACTUAL_REF="$(cat "$RUNNER_TEMP/payload.json" | jq -r .ref)"
+          ACTUAL_CHECKOUT_URI="$(cat "$RUNNER_TEMP/payload.json" | jq -r .checkout_uri)"
+
+          if [[ "$EXPECTED_COMMIT_OID" != "$ACTUAL_COMMIT_OID" ]]; then
+            echo "::error Invalid commit oid. Expected: $EXPECTED_COMMIT_OID Actual: $ACTUAL_COMMIT_OID"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
+
+          if [[ "$EXPECTED_REF" != "$ACTUAL_REF" ]]; then
+            echo "::error Invalid ref. Expected: '$EXPECTED_REF' Actual: '$ACTUAL_REF'"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
+
+          if [[ "$ACTUAL_CHECKOUT_URI" != *$EXPECTED_CHECKOUT_URI_SUFFIX ]]; then
+            echo "::error Invalid checkout URI suffix. Expected suffix: $EXPECTED_CHECKOUT_URI_SUFFIX Actual uri: $ACTUAL_CHECKOUT_URI"
+            echo "$RUNNER_TEMP/payload.json"
+            exit 1
+          fi
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__zstd-bundle-streaming.yml

@@ -0,0 +1,115 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle (streaming)
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle-streaming:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+    name: Zstandard bundle (streaming)
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            if (!toolsUrl.endsWith('.tar.zst')) {
+              core.setFailed(
+                `Expected the tools URL to be a .tar.zst file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_ZSTD_BUNDLE_STREAMING_EXTRACTION: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/__zstd-bundle.yml

@@ -0,0 +1,118 @@
+# Warning: This file is generated automatically, and should not be modified.
+# Instead, please modify the template in the pr-checks directory and run:
+#     (cd pr-checks; pip install ruamel.yaml@0.17.31 && python3 sync.py)
+# to regenerate this file.
+
+name: PR Check - Zstandard bundle
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+      - main
+      - releases/v*
+  pull_request:
+    types:
+      - opened
+      - synchronize
+      - reopened
+      - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  zstd-bundle:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: macos-latest
+            version: linked
+          - os: ubuntu-latest
+            version: linked
+          - os: windows-latest
+            version: linked
+    name: Zstandard bundle
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+      - name: Setup Python on macOS
+        uses: actions/setup-python@v5
+        if: runner.os == 'macOS' && matrix.version == 'stable-v2.14.6'
+        with:
+          python-version: '3.11'
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+          use-all-platform-bundle: 'false'
+          setup-kotlin: 'true'
+      - name: Remove CodeQL from toolcache
+        uses: actions/github-script@v7
+        with:
+          script: |
+            const fs = require('fs');
+            const path = require('path');
+            const codeqlPath = path.join(process.env['RUNNER_TOOL_CACHE'], 'CodeQL');
+            if (codeqlPath !== undefined) {
+              fs.rmdirSync(codeqlPath, { recursive: true });
+            }
+      - id: init
+        uses: ./../action/init
+        with:
+          languages: javascript
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+      - uses: ./../action/analyze
+        with:
+          output: ${{ runner.temp }}/results
+          upload-database: false
+      - name: Upload SARIF
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ matrix.os }}-zstd-bundle.sarif
+          path: ${{ runner.temp }}/results/javascript.sarif
+          retention-days: 7
+      - name: Check diagnostic with expected tools URL appears in SARIF
+        uses: actions/github-script@v7
+        env:
+          SARIF_PATH: ${{ runner.temp }}/results/javascript.sarif
+        with:
+          script: |
+            const fs = require('fs');
+
+            const sarif = JSON.parse(fs.readFileSync(process.env['SARIF_PATH'], 'utf8'));
+            const run = sarif.runs[0];
+
+            const toolExecutionNotifications = run.invocations[0].toolExecutionNotifications;
+            const downloadTelemetryNotifications = toolExecutionNotifications.filter(n =>
+              n.descriptor.id === 'codeql-action/bundle-download-telemetry'
+            );
+            if (downloadTelemetryNotifications.length !== 1) {
+              core.setFailed(
+                'Expected exactly one reporting descriptor in the ' +
+                  `'runs[].invocations[].toolExecutionNotifications[]' SARIF property, but found ` +
+                  `${downloadTelemetryNotifications.length}. All notification reporting descriptors: ` +
+                  `${JSON.stringify(toolExecutionNotifications)}.`
+              );
+            }
+
+            const toolsUrl = downloadTelemetryNotifications[0].properties.attributes.toolsUrl;
+            console.log(`Found tools URL: ${toolsUrl}`);
+
+            const expectedExtension = process.env['RUNNER_OS'] === 'Windows' ? '.tar.gz' : '.tar.zst';
+
+            if (!toolsUrl.endsWith(expectedExtension)) {
+              core.setFailed(
+                `Expected the tools URL to be a ${expectedExtension} file, but found ${toolsUrl}.`
+              );
+            }
+    env:
+      CODEQL_ACTION_ZSTD_BUNDLE: true
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/check-expected-release-files.yml

@@ -0,0 +1,25 @@
+name: Check Expected Release Files
+
+on:
+  pull_request:
+    paths:
+      - .github/workflows/check-expected-release-files.yml
+      - src/defaults.json
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
+
+jobs:
+  check-expected-release-files:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout CodeQL Action
+        uses: actions/checkout@v4
+      - name: Check Expected Release Files
+        run: |
+          bundle_version="$(cat "./src/defaults.json" | jq -r ".bundleVersion")"
+          set -x
+          for expected_file in "codeql-bundle.tar.gz" "codeql-bundle-linux64.tar.gz" "codeql-bundle-osx64.tar.gz" "codeql-bundle-win64.tar.gz"; do
+            curl --location --fail --head --request GET "https://github.com/github/codeql-action/releases/download/$bundle_version/$expected_file" > /dev/null
+          done

github/codeql-action-v2/.github/workflows/codeql.yml

@@ -0,0 +1,101 @@
+name: "CodeQL action"
+
+on:
+  push:
+    branches: [main, releases/v*]
+  pull_request:
+    branches: [main, releases/v*]
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
+  schedule:
+    # Weekly on Sunday.
+    - cron: '30 1 * * 0'
+  workflow_dispatch:
+
+env:
+  CODEQL_ACTION_TESTING_ENVIRONMENT: codeql-action-pr-checks
+
+jobs:
+  # Identify the CodeQL tool versions to use in the analysis job.
+  check-codeql-versions:
+    runs-on: ubuntu-latest
+    outputs:
+      versions: ${{ steps.compare.outputs.versions }}
+
+    permissions:
+      security-events: write
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Init with default CodeQL bundle from the VM image
+      id: init-default
+      uses: ./init
+      with:
+        languages: javascript
+    - name: Remove empty database
+      # allows us to run init a second time
+      run: |
+        rm -rf "$RUNNER_TEMP/codeql_databases"
+    - name: Init with latest CodeQL bundle
+      id: init-latest
+      uses: ./init
+      with:
+        tools: linked
+        languages: javascript
+    - name: Compare default and latest CodeQL bundle versions
+      id: compare
+      env:
+        CODEQL_DEFAULT: ${{ steps.init-default.outputs.codeql-path }}
+        CODEQL_LATEST: ${{ steps.init-latest.outputs.codeql-path }}
+      run: |
+        CODEQL_VERSION_DEFAULT="$("$CODEQL_DEFAULT" version --format terse)"
+        CODEQL_VERSION_LATEST="$("$CODEQL_LATEST" version --format terse)"
+        echo "Default CodeQL bundle version is $CODEQL_VERSION_DEFAULT"
+        echo "Latest CodeQL bundle version is $CODEQL_VERSION_LATEST"
+
+        # If we're running on a pull request, run with both bundles, even if `tools: linked` would
+        # be the same as `tools: null`. This allows us to make the job for each of the bundles a
+        # required status check.
+        #
+        # If we're running on push or schedule, then we can skip running with `tools: linked` when it would be
+        # the same as running with `tools: null`.
+        if [[ "$GITHUB_EVENT_NAME" != "pull_request" && "$CODEQL_VERSION_DEFAULT" == "$CODEQL_VERSION_LATEST" ]]; then
+          VERSIONS_JSON='[null]'
+        else
+          VERSIONS_JSON='[null, "linked"]'
+        fi
+
+        # Output a JSON-encoded list with the distinct versions to test against.
+        echo "Suggested matrix config for analysis job: $VERSIONS_JSON"
+        echo "versions=${VERSIONS_JSON}" >> $GITHUB_OUTPUT
+
+  build:
+    needs: [check-codeql-versions]
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-20.04,ubuntu-22.04,windows-2019,windows-2022,macos-13,macos-14]
+        tools: ${{ fromJson(needs.check-codeql-versions.outputs.versions) }}
+    runs-on: ${{ matrix.os }}
+
+    permissions:
+      security-events: write
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v4
+    - name: Initialize CodeQL
+      uses: ./init
+      id: init
+      with:
+        languages: javascript
+        config-file: ./.github/codeql/codeql-config.yml
+        tools: ${{ matrix.tools }}
+    # confirm steps.init.outputs.codeql-path points to the codeql binary
+    - name: Print CodeQL Version
+      run: ${{steps.init.outputs.codeql-path}} version --format=json
+    - name: Perform CodeQL Analysis
+      uses: ./analyze
+      with:
+        category: "/language:javascript"

github/codeql-action-v2/.github/workflows/codescanning-config-cli.yml

@@ -0,0 +1,208 @@
+# Tests that the generated code scanning config file contains the expected contents
+
+name: Code-Scanning config CLI tests
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  code-scanning-config-tests:
+    continue-on-error: true
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: linked
+        - os: macos-latest
+          version: linked
+        - os: ubuntu-latest
+          version: default
+        - os: macos-latest
+          version: default
+        - os: ubuntu-latest
+          version: nightly-latest
+        - os: macos-latest
+          version: nightly-latest
+
+    # Code-Scanning config not created because environment variable is not set
+    name: Code Scanning Configuration tests
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+
+    - name: Empty file
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: "{}"
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Packs from input
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        packs: codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Packs from input with +
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        packs: + codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries from input
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }]
+          }
+        languages: javascript
+        queries: ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries from input with +
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }]
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from input with +
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }],
+            "packs": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: + codeql-testing/codeql-pack1@1.0.0, codeql-testing/codeql-pack2
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }],
+            "packs": {
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ]
+            }
+          }
+        languages: javascript
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config overriden by input
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [{ "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }],
+            "packs": ["codeql/javascript-queries"]
+          }
+        languages: javascript
+        queries: ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: codeql/javascript-queries
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Queries and packs from config merging with input
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" },
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql" }
+            ],
+            "packs": {
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2", "codeql/javascript-queries" ]
+            }
+          }
+        languages: javascript
+        queries: + ./codeql-qlpacks/complex-javascript-qlpack/show_ifs.ql
+        packs: + codeql/javascript-queries
+        config-file-test: .github/codeql/queries-and-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Multi-language packs from config
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "packs": {
+              "javascript": ["codeql-testing/codeql-pack1@1.0.0", "codeql-testing/codeql-pack2" ],
+              "ruby": ["codeql/ruby-queries"]
+            },
+            "queries": [
+              { "uses": "./codeql-qlpacks/complex-javascript-qlpack/foo2/show_ifs.ql" }
+            ]
+          }
+        languages: javascript,ruby
+        config-file-test: .github/codeql/multi-language-packs-config.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Other config properties
+      if: success() || failure()
+      uses: ./../action/.github/actions/check-codescanning-config
+      with:
+        expected-config-file-contents: |
+          {
+            "name": "Config using all properties",
+            "packs": ["codeql/javascript-queries" ],
+            "disable-default-queries": true,
+            "paths-ignore": ["xxx"],
+            "paths": ["yyy"]
+          }
+        languages: javascript
+        packs: + codeql/javascript-queries
+        config-file-test: .github/codeql/other-config-properties.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}

github/codeql-action-v2/.github/workflows/debug-artifacts-failure.yml

@@ -0,0 +1,87 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist
+# when the analyze step fails.
+name: PR Check - Debug artifacts after failure
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    name: Upload debug artifacts after failure in analyze
+    continue-on-error: true
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump GitHub event
+        run: cat "${GITHUB_EVENT_PATH}"
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: linked
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+        env:
+          # Forces a failure in this step.
+          CODEQL_ACTION_EXTRA_OPTIONS: '{ "database": { "finalize": ["--invalid-option"] } }'
+        with:
+          expect-error: true
+  download-and-check-artifacts:
+    name: Download and check debug artifacts after failure in analyze
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          LANGUAGES="cpp csharp go java javascript python"
+          cd "./my-debug-artifacts"
+          echo "Artifacts from run:"
+          for language in $LANGUAGES; do
+            echo "- Checking $language"
+            if [[ ! -f "my-db-$language-partial.zip" ]] ; then
+              echo "Missing a partial database bundle for $language"
+              exit 1
+            fi
+            if [[ ! -d "log" ]] ; then
+              echo "Missing database initialization logs"
+              exit 1
+            fi
+            if [[ ! "$language" == "go" ]] && [[ ! -d "$language/log" ]] ; then
+              echo "Missing logs for $language"
+              exit 1
+            fi
+          done
+        env:
+          GO111MODULE: auto

github/codeql-action-v2/.github/workflows/debug-artifacts.yml

@@ -0,0 +1,97 @@
+# Checks logs, SARIF, and database bundle debug artifacts exist.
+name: PR Check - Debug artifact upload
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  upload-artifacts:
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+        - stable-v2.15.5
+        - stable-v2.16.6
+        - stable-v2.17.6
+        - stable-v2.18.4
+        - stable-v2.19.4
+        - default
+        - linked
+        - nightly-latest
+    name: Upload debug artifacts
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+      - name: Prepare test
+        id: prepare-test
+        uses: ./.github/actions/prepare-test
+        with:
+          version: ${{ matrix.version }}
+      - uses: actions/setup-go@v5
+        with:
+          go-version: ^1.13.1
+      - uses: ./../action/init
+        id: init
+        with:
+          tools: ${{ steps.prepare-test.outputs.tools-url }}
+          debug: true
+          debug-artifact-name: my-debug-artifacts
+          debug-database-name: my-db
+          # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+          languages: cpp,csharp,go,java,javascript,python,ruby
+      - name: Build code
+        shell: bash
+        run: ./build.sh
+      - uses: ./../action/analyze
+        id: analysis
+  download-and-check-artifacts:
+    name: Download and check debug artifacts
+    needs: upload-artifacts
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+      - name: Download all artifacts
+        uses: actions/download-artifact@v4
+      - name: Check expected artifacts exist
+        shell: bash
+        run: |
+          VERSIONS="stable-v2.15.5 stable-v2.16.6 stable-v2.17.6 stable-v2.18.4 stable-v2.19.4 default linked nightly-latest"
+          LANGUAGES="cpp csharp go java javascript python"
+          for version in $VERSIONS; do
+            pushd "./my-debug-artifacts-${version//./}"
+            echo "Artifacts from version $version:"
+            for language in $LANGUAGES; do
+              echo "- Checking $language"
+              if [[ ! -f "$language.sarif" ]] ; then
+                echo "Missing a SARIF file for $language"
+                exit 1
+              fi
+              if [[ ! -f "my-db-$language.zip" ]] ; then
+                echo "Missing a database bundle for $language"
+                exit 1
+              fi
+              if [[ ! -d "$language/log" ]] ; then
+                echo "Missing logs for $language"
+                exit 1
+              fi
+            done
+            popd
+          done
+        env:
+          GO111MODULE: auto

github/codeql-action-v2/.github/workflows/expected-queries-runs.yml

@@ -0,0 +1,49 @@
+name: Check queries that ran
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  expected-queries:
+    name: Expected Queries Tests
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      security-events: write
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: linked
+    - uses: ./../action/init
+      with:
+        languages: javascript
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - uses: ./../action/analyze
+      with:
+        output: ${{ runner.temp }}/results
+
+    - name: Check Sarif
+      uses: ./../action/.github/actions/check-sarif
+      with:
+        sarif-file: ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/incomplete-hostname-regexp,js/path-injection
+        queries-not-run: foo,bar

github/codeql-action-v2/.github/workflows/post-release-mergeback.yml

@@ -0,0 +1,184 @@
+# This workflow runs after a merge to any release branch of the action. It:
+# 1. Tags the merge commit on the release branch that represents the new release with an `vN.x.y`
+#    tag
+# 2. Updates the `vN` tag to refer to this merge commit.
+# 3. Iff vN == vLatest, merges any changes from the release back into the main branch.
+#    Typically, this is two commits – one to update the version number and one to update dependencies.
+name: Tag release and merge back
+
+on:
+  workflow_dispatch:
+    inputs:
+      baseBranch:
+        description: 'The base branch to merge into'
+        default: main
+        required: false
+
+  push:
+    branches:
+      - releases/v*
+
+jobs:
+  merge-back:
+    runs-on: ubuntu-latest
+    environment: Automation
+    if: github.repository == 'github/codeql-action'
+    env:
+      BASE_BRANCH: "${{ github.event.inputs.baseBranch || 'main' }}"
+      HEAD_BRANCH: "${{ github.head_ref || github.ref }}"
+
+    steps:
+      - name: Dump environment
+        run: env
+
+      - name: Dump GitHub context
+        env:
+          GITHUB_CONTEXT: '${{ toJson(github) }}'
+        run: echo "${GITHUB_CONTEXT}"
+
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0  # ensure we have all tags and can push commits
+      - uses: actions/setup-node@v4
+
+      - name: Update git config
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Get version and new branch
+        id: getVersion
+        run: |
+          VERSION="v$(jq '.version' -r 'package.json')"
+          echo "version=${VERSION}" >> $GITHUB_OUTPUT
+          short_sha="${GITHUB_SHA:0:8}"
+          NEW_BRANCH="mergeback/${VERSION}-to-${BASE_BRANCH}-${short_sha}"
+          echo "newBranch=${NEW_BRANCH}" >> $GITHUB_OUTPUT
+          LATEST_RELEASE_BRANCH=$(git branch -r | grep -E "origin/releases/v[0-9]+$" | sed 's/origin\///g' | sort -V | tail -1 | xargs)
+          echo "latest_release_branch=${LATEST_RELEASE_BRANCH}" >> $GITHUB_OUTPUT
+
+      - name: Dump branches
+        env:
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+        run: |
+          echo "BASE_BRANCH ${BASE_BRANCH}"
+          echo "HEAD_BRANCH ${HEAD_BRANCH}"
+          echo "NEW_BRANCH ${NEW_BRANCH}"
+          echo "LATEST_RELEASE_BRANCH ${LATEST_RELEASE_BRANCH}"
+          echo "GITHUB_REF ${GITHUB_REF}"
+
+      - name: Create mergeback branch
+        env:
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+        run: |
+          git checkout -b "${NEW_BRANCH}"
+
+      - name: Check for tag
+        id: check
+        env:
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+        run: |
+          set +e # don't fail on an errored command
+          git ls-remote --tags origin | grep "${VERSION}"
+          exists="$?"
+          if [ "${exists}" -eq 0 ]; then
+            echo "Tag ${VERSION} exists. Not going to re-release."
+            echo "exists=true" >> $GITHUB_OUTPUT
+          else
+            echo "Tag ${VERSION} does not exist yet."
+          fi
+
+      # we didn't tag the release during the update-release-branch workflow because the
+      # commit that actually makes it to the release branch is a merge commit,
+      # and not yet known during the first workflow. We tag now because we know the correct commit.
+      - name: Tag release
+        if: steps.check.outputs.exists != 'true'
+        env:
+          VERSION: ${{ steps.getVersion.outputs.version }}
+        run: |
+          # Create the `vx.y.z` tag
+          git tag --annotate "${VERSION}" --message "${VERSION}"
+          # Update the `vx` tag
+          major_version_tag=$(cut -d '.' -f1 <<< "${VERSION}")
+          # Use `--force` to overwrite the major version tag
+          git tag --annotate "${major_version_tag}" --message "${major_version_tag}" --force
+          # Push the tags, using:
+          # - `--atomic` to make sure we either update both tags or neither (an intermediate state,
+          #   e.g. where we update the vN.x.y tag on the remote but not the vN tag, could result in
+          #   unwanted Dependabot updates, e.g. from vN to vN.x.y)
+          # - `--force` since we're overwriting the `vN` tag
+          git push origin --atomic --force refs/tags/"${VERSION}" refs/tags/"${major_version_tag}"
+
+      - name: Prepare partial Changelog
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+        run: |
+          python .github/workflows/script/prepare_changelog.py CHANGELOG.md "$VERSION" > $PARTIAL_CHANGELOG
+
+          echo "::group::Partial CHANGELOG"
+          cat $PARTIAL_CHANGELOG
+          echo "::endgroup::"
+
+      - name: Create mergeback branch
+        if: ${{ steps.check.outputs.exists != 'true' && endsWith(github.ref_name, steps.getVersion.outputs.latest_release_branch) }}
+        env:
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+          NEW_BRANCH: "${{ steps.getVersion.outputs.newBranch }}"
+          GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
+        run: |
+          set -exu
+          pr_title="Mergeback ${VERSION} ${HEAD_BRANCH} into ${BASE_BRANCH}"
+          pr_body=$(cat << EOF
+            This PR bumps the version number and updates the changelog after the ${VERSION} release.
+
+            Please do the following:
+
+            - [ ] Remove and re-add the "Update dependencies" label to the PR to trigger just this workflow.
+            - [ ] Wait for the "Update dependencies" workflow to push a commit updating the dependencies.
+            - [ ] Mark the PR as ready for review to trigger the full set of PR checks.
+            - [ ] Approve and merge the PR. When merging the PR, make sure "Create a merge commit" is
+                  selected rather than "Squash and merge" or "Rebase and merge".
+          EOF
+          )
+
+          # Update the version number ready for the next release
+          npm version patch --no-git-tag-version
+
+          # Update the changelog, adding a new version heading directly above the most recent existing one
+          awk '!f && /##/{print "'"## [UNRELEASED]\n\nNo user facing changes.\n"'"; f=1}1' CHANGELOG.md > temp && mv temp CHANGELOG.md
+          git add .
+          git commit -m "Update changelog and version after ${VERSION}"
+
+          git push origin "${NEW_BRANCH}"
+
+          # PR checks won't be triggered on PRs created by Actions. Therefore mark the PR as draft
+          # so that a maintainer can take the PR out of draft, thereby triggering the PR checks.
+          gh pr create \
+            --head "${NEW_BRANCH}" \
+            --base "${BASE_BRANCH}" \
+            --title "${pr_title}" \
+            --label "Update dependencies" \
+            --body "${pr_body}" \
+            --assignee "${GITHUB_ACTOR}" \
+            --draft
+
+      - name: Generate token
+        uses: actions/create-github-app-token@c1a285145b9d317df6ced56c09f525b5c2b6f755
+        id: app-token
+        with:
+          app-id: ${{ vars.AUTOMATION_APP_ID }}
+          private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
+
+      - name: Create the GitHub release
+        env:
+          PARTIAL_CHANGELOG: "${{ runner.temp }}/partial_changelog.md"
+          VERSION: "${{ steps.getVersion.outputs.version }}"
+          GH_TOKEN: ${{ steps.app-token.outputs.token }}
+        run: |
+          # Do not mark this release as latest. The most recent CLI release must be marked as latest.
+          gh release create \
+            "$VERSION" \
+            --latest=false \
+            --title "$VERSION" \
+            --notes-file "$PARTIAL_CHANGELOG"

github/codeql-action-v2/.github/workflows/pr-checks.yml

@@ -0,0 +1,162 @@
+name: PR Checks
+
+on:
+  push:
+  pull_request:
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
+  workflow_dispatch:
+
+jobs:
+  check-js:
+    name: Check JS
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    permissions:
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        node-types-version: [16.11, current] # we backport this matrix job in order to maintain the same check names
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Lint
+        id: lint
+        run: npm run-script lint-ci
+
+      - name: Upload sarif
+        uses: github/codeql-action/upload-sarif@v3
+        # Only upload SARIF for the latest version of Node.js
+        if: "!cancelled() && matrix.node-types-version == 'current' && !startsWith(github.head_ref, 'dependabot/')"
+        with:
+          sarif_file: eslint.sarif
+          category: eslint
+
+      - name: Update version of @types/node
+        if: matrix.node-types-version != 'current'
+        env:
+          NODE_TYPES_VERSION: ${{ matrix.node-types-version }}
+        run: |
+          # Export `NODE_TYPES_VERSION` so it's available to jq
+          export NODE_TYPES_VERSION="${NODE_TYPES_VERSION}"
+          contents=$(jq '.devDependencies."@types/node" = env.NODE_TYPES_VERSION' package.json)
+          echo "${contents}" > package.json
+          # Usually we run `npm install` on macOS to ensure that we pick up macOS-only dependencies.
+          # However we're not checking in the updated lockfile here, so it's fine to run
+          # `npm install` on Linux.
+          npm install
+
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "github-actions@github.com"
+            git config --global user.name "github-actions[bot]"
+            # The period in `git add --all .` ensures that we stage deleted files too.
+            git add --all .
+            git commit -m "Use @types/node=${NODE_TYPES_VERSION}"
+          fi
+
+      - name: Check generated JS
+        if: matrix.node-types-version != 'current' # we do not need to test the newer node on the v2 branch
+        run: .github/workflows/script/check-js.sh
+
+  check-node-modules:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check modules up to date
+    runs-on: macos-latest
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Check node modules up to date
+        run: .github/workflows/script/check-node-modules.sh
+
+  check-file-contents:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Check file contents
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          # When updating this, update the autogenerated code header in `sync.py` too.
+          pip install ruamel.yaml==0.17.31
+
+      # Ensure the generated PR check workflows are up to date.
+      - name: Verify PR checks up to date
+        run: .github/workflows/script/verify-pr-checks.sh
+
+  npm-test:
+    if: github.event_name != 'push' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/releases/v')
+    name: Unit Test
+    needs: [check-js, check-node-modules]
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 45
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: npm test
+        run: |
+          # Run any commands referenced in package.json using Bash, otherwise
+          # we won't be able to find them on Windows.
+          npm config set script-shell bash
+          npm test
+
+  check-node-version:
+    if: github.event.pull_request
+    name: Check Action Node versions
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    env:
+      BASE_REF: ${{ github.base_ref }}
+
+    steps:
+      - uses: actions/checkout@v4
+      - id: head-version
+        name: Verify all Actions use the same Node version
+        run: |
+          NODE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
+          echo "NODE_VERSION: ${NODE_VERSION}"
+          if [[ $(echo "$NODE_VERSION" | wc -l) -gt 1 ]]; then
+            echo "::error::More than one node version used in 'action.yml' files."
+            exit 1
+          fi
+          echo "node_version=${NODE_VERSION}" >> $GITHUB_OUTPUT
+
+      - id: checkout-base
+        name: 'Backport: Check out base ref'
+        if: ${{ startsWith(github.head_ref, 'backport-') }}
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ env.BASE_REF }}
+
+      - name: 'Backport: Verify Node versions unchanged'
+        if: steps.checkout-base.outcome == 'success'
+        env:
+          HEAD_VERSION: ${{ steps.head-version.outputs.node_version }}
+        run: |
+          BASE_VERSION=$(find . -name "action.yml" -exec yq -e '.runs.using' {} \; | grep node | sort | uniq)
+          echo "HEAD_VERSION: ${HEAD_VERSION}"
+          echo "BASE_VERSION: ${BASE_VERSION}"
+          if [[ "$BASE_VERSION" != "$HEAD_VERSION" ]]; then
+            echo "::error::Cannot change the Node version of an Action in a backport PR."
+            exit 1
+          fi

github/codeql-action-v2/.github/workflows/publish-immutable-action.yml

@@ -0,0 +1,35 @@
+name: 'Publish Immutable Action Version'
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      id-token: write
+      packages: write
+
+    steps:
+      - name: Check release name
+        id: check
+        env:
+          RELEASE_NAME: ${{ github.event.release.name }}
+        run: |
+          echo "Release name: ${{ github.event.release.name }}"
+          if [[ $RELEASE_NAME == v* ]]; then
+            echo "This is a CodeQL Action release. Create an Immutable Action"
+            echo "is-action-release=true" >> $GITHUB_OUTPUT
+          else
+            echo "This is a CodeQL Bundle release. Do not create an Immutable Action"
+            echo "is-action-release=false" >> $GITHUB_OUTPUT
+          fi
+      - name: Checking out
+        if: steps.check.outputs.is-action-release == 'true'
+        uses: actions/checkout@v4
+      - name: Publish
+        if: steps.check.outputs.is-action-release == 'true'
+        id: publish
+        uses: actions/publish-immutable-action@v0.0.4

github/codeql-action-v2/.github/workflows/python312-windows.yml

@@ -0,0 +1,41 @@
+name: Test that the workaround for python 3.12 on windows works
+
+on:
+  push:
+    branches: [main, releases/v*]
+  pull_request:
+    # Run checks on reopened draft PRs to support triggering PR checks on draft PRs that were opened
+    # by other workflows.
+    types: [opened, synchronize, reopened, ready_for_review]
+  schedule:
+    # Weekly on Monday.
+    - cron: '0 0 * * 1'
+  workflow_dispatch:
+
+jobs:
+  test-setup-python-scripts:
+    env:
+      CODEQL_ACTION_TEST_MODE: true
+    timeout-minutes: 45
+    runs-on: windows-latest
+
+    steps:
+    - uses: actions/setup-python@v5
+      with:
+        python-version: 3.12
+
+    - uses: actions/checkout@v4
+
+    - name: Prepare test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: default
+
+    - name: Initialize CodeQL
+      uses: ./../action/init
+      with:
+        tools: linked
+        languages: python
+
+    - name: Analyze
+      uses: ./../action/analyze

github/codeql-action-v2/.github/workflows/query-filters.yml

@@ -0,0 +1,57 @@
+name: Query filters tests
+
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+
+jobs:
+  query-filters:
+    name: Query Filters Tests
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: linked
+
+    - name: Check SARIF for default queries with Single include, Single exclude
+      uses: ./../action/.github/actions/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip
+        queries-not-run: js/path-injection
+        config-file: ./.github/codeql/codeql-config-query-filters1.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Check SARIF for query packs with Single include, Single exclude
+      uses: ./../action/.github/actions/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip,javascript/example/empty-or-one-block
+        queries-not-run: js/path-injection
+        config-file: ./.github/codeql/codeql-config-query-filters2.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+
+    - name: Check SARIF for query packs and local queries with Single include, Single exclude
+      uses: ./../action/.github/actions/query-filter-test
+      with:
+        sarif-file:  ${{ runner.temp }}/results/javascript.sarif
+        queries-run: js/zipslip,javascript/example/empty-or-one-block,inrepo-javascript-querypack/show-ifs
+        queries-not-run: js/path-injection,complex-python-querypack/show-ifs,complex-python-querypack/foo/bar/show-ifs
+        config-file: ./.github/codeql/codeql-config-query-filters3.yml
+        tools: ${{ steps.prepare-test.outputs.tools-url }}

github/codeql-action-v2/.github/workflows/rebuild.yml

@@ -0,0 +1,79 @@
+name: Rebuild Action
+
+on:
+  pull_request:
+    types: [labeled]
+  workflow_dispatch:
+
+jobs:
+  rebuild:
+    name: Rebuild Action
+    runs-on: ubuntu-latest
+    if: github.event.label.name == 'Rebuild'
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.event.pull_request.head.ref }}
+
+      - name: Remove label
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+        run: |
+          gh pr edit --repo github/codeql-action "$PR_NUMBER" \
+            --remove-label "Rebuild"
+
+      - name: Merge in changes from base branch
+        env:
+          BASE_BRANCH: ${{ github.event.pull_request.base.ref }}
+        run: |
+          git fetch origin "$BASE_BRANCH"
+
+          # Allow merge conflicts in `lib`, since rebuilding should resolve them.
+          git merge "origin/$BASE_BRANCH" || echo "Merge conflicts detected"
+
+          # Check for merge conflicts outside of `lib`. Disable git diff's trailing whitespace check
+          # since `node_modules/@types/semver/README.md` fails it.
+          if git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/'; then
+            echo "Merge conflicts detected outside of lib/ directory. Please resolve them manually."
+            git -c core.whitespace=-trailing-space diff --check | grep --invert-match '^lib/' || true
+            exit 1
+          fi
+
+      - name: Compile TypeScript
+        run: |
+          npm install
+          npm run lint -- --fix
+          npm run build
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      - name: Generate workflows
+        run: |
+          cd pr-checks
+          python -m pip install --upgrade pip
+          pip install ruamel.yaml==0.17.31
+          python3 sync.py
+
+      - name: Check for changes and push
+        env:
+          BRANCH: ${{ github.event.pull_request.head.ref }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+        run: |
+          if [ ! -z "$(git status --porcelain)" ]; then
+            git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+            git config --global user.name "github-actions[bot]"
+            git add --all
+            git commit -m "Rebuild"
+            git push origin "HEAD:$BRANCH"
+            echo "Pushed a commit to rebuild the Action." \
+              "Please mark the PR as ready for review to trigger PR checks." |
+              gh pr comment --body-file - --repo github/codeql-action "$PR_NUMBER"
+            gh pr ready --undo --repo github/codeql-action "$PR_NUMBER"
+          fi

github/codeql-action-v2/.github/workflows/script/check-js.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+set -eu
+
+# Sanity check that repo is clean to start with
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then this workflow needs attention...
+    >&2 echo "Failed: Repo should be clean before testing!"
+    exit 1
+fi
+# Wipe the lib directory in case there are extra unnecessary files in there
+rm -rf lib
+# Generate the JavaScript files
+npm run-script build
+# Check that repo is still clean
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then the PR needs attention
+    >&2 echo "Failed: JavaScript files are not up to date. Run 'rm -rf lib && npm run-script build' to update"
+    git status
+    exit 1
+fi
+echo "Success: JavaScript files are up to date"

github/codeql-action-v2/.github/workflows/script/check-node-modules.sh

@@ -0,0 +1,20 @@
+#!/bin/bash
+set -eu
+
+# Sanity check that repo is clean to start with
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then this workflow needs attention...
+    >&2 echo "Failed: Repo should be clean before testing!"
+    exit 1
+fi
+
+"$(dirname "$0")/update-node-modules.sh" check-only
+
+# Check that repo is still clean
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then the PR needs attention
+    >&2 echo "Failed: node_modules are not up to date. Add the 'Update dependencies' label to your PR to update them. Note it is important that node modules are updated on macOS and not any other operating system as there is one dependency (fsevents) that is needed for macOS and may not be installed if dependencies are updated on a Windows or Linux machine."
+    git status
+    exit 1
+fi
+echo "Success: node_modules are up to date"

github/codeql-action-v2/.github/workflows/script/prepare_changelog.py

@@ -0,0 +1,37 @@
+import os
+import sys
+
+EMPTY_CHANGELOG = 'No changes.\n\n'
+
+# Prepare the changelog for the new release
+# This function will extract the part of the changelog that
+# we want to include in the new release.
+def extract_changelog_snippet(changelog_file, version_tag):
+  output = ''
+  if (not os.path.exists(changelog_file)):
+    output = EMPTY_CHANGELOG
+
+  else:
+    with open('CHANGELOG.md', 'r') as f:
+      lines = f.readlines()
+
+      # Include everything up to, but excluding the second heading
+      found_first_section = False
+      for i, line in enumerate(lines):
+        if line.startswith('## '):
+          if found_first_section:
+            break
+          found_first_section = True
+        output += line
+
+  output += f"See the full [CHANGELOG.md](https://github.com/github/codeql-action/blob/{version_tag}/CHANGELOG.md) for more information."
+
+  return output
+
+
+if len(sys.argv) < 3:
+  raise Exception('Expecting argument: changelog_file version_tag')
+changelog_file = sys.argv[1]
+version_tag = sys.argv[2]
+
+print(extract_changelog_snippet(changelog_file, version_tag))

github/codeql-action-v2/.github/workflows/script/update-node-modules.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+set -eu
+
+if [ "$1" != "update" ] && [ "$1" != "check-only" ]; then
+    >&2 echo "Failed: Invalid argument. Must be 'update' or 'check-only'"
+    exit 1
+fi
+
+npm install --force -g npm@9.2.0
+
+# clean the npm cache to ensure we don't have any files owned by root
+sudo npm cache clean --force
+
+if [ "$1" = "update" ]; then
+    npm install
+fi
+
+# Reinstall modules and then clean to remove absolute paths
+# Use 'npm ci' instead of 'npm install' as this is intended to be reproducible
+npm ci
+npm run removeNPMAbsolutePaths

github/codeql-action-v2/.github/workflows/script/update-required-checks.sh

@@ -0,0 +1,57 @@
+#!/usr/bin/env bash
+# Update the required checks based on the current branch.
+# Typically, this will be main.
+
+SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
+REPO_DIR="$(dirname "$SCRIPT_DIR")"
+GRANDPARENT_DIR="$(dirname "$REPO_DIR")"
+source "$GRANDPARENT_DIR/releases.ini"
+
+if ! gh auth status 2>/dev/null; then
+  gh auth status
+  echo "Failed: Not authorized. This script requires admin access to github/codeql-action through the gh CLI."
+  exit 1
+fi
+
+if [ "$#" -eq 1 ]; then
+  # If we were passed an argument, use that as the SHA
+  GITHUB_SHA="$1"
+elif [ "$#" -gt 1 ]; then
+  echo "Usage: $0 [SHA]"
+  echo "Update the required checks based on the SHA, or main."
+  exit 1
+elif [ -z "$GITHUB_SHA" ]; then
+  # If we don't have a SHA, use main
+  GITHUB_SHA="$(git rev-parse main)"
+fi
+
+echo "Getting checks for $GITHUB_SHA"
+
+# Ignore any checks with "https://", CodeQL, LGTM, Update, and ESLint checks.
+CHECKS="$(gh api repos/github/codeql-action/commits/"${GITHUB_SHA}"/check-runs --paginate | jq --slurp --compact-output --raw-output '[.[].check_runs.[] | select(.conclusion != "skipped") | .name | select(contains("https://") or . == "CodeQL" or . == "Dependabot" or . == "check-expected-release-files" or contains("Update") or contains("ESLint") or contains("update") or contains("test-setup-python-scripts") | not)] | unique | sort')"
+
+echo "$CHECKS" | jq
+
+echo "{\"contexts\": ${CHECKS}}" > checks.json
+
+echo "Updating main"
+gh api --silent -X "PATCH" "repos/github/codeql-action/branches/main/protection/required_status_checks" --input checks.json
+
+# list all branchs on origin remote matching releases/v*
+BRANCHES="$(git ls-remote --heads origin 'releases/v*' | sed 's?.*refs/heads/??' | sort -V)"
+
+for BRANCH in $BRANCHES; do
+
+  # strip exact 'releases/v' prefix from $BRANCH using count of characters
+  VERSION="${BRANCH:10}"
+
+  if [ "$VERSION" -lt "$OLDEST_SUPPORTED_MAJOR_VERSION" ]; then
+    echo "Skipping $BRANCH"
+    continue
+  fi
+
+  echo "Updating $BRANCH"
+  gh api --silent -X "PATCH" "repos/github/codeql-action/branches/$BRANCH/protection/required_status_checks" --input checks.json
+done
+
+rm checks.json

github/codeql-action-v2/.github/workflows/script/verify-pr-checks.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+set -eu
+
+# Sanity check that repo is clean to start with
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then this workflow needs attention...
+    >&2 echo "Failed: Repo should be clean before testing!"
+    exit 1
+fi
+
+# Wipe the generated PR checks in case there are extra unnecessary files in there
+rm -rf .github/workflows/__*
+
+# Generate the PR checks
+cd pr-checks && python3 sync.py
+
+# Check that repo is still clean
+if [ ! -z "$(git status --porcelain)" ]; then
+    # If we get a fail here then the PR needs attention
+    git diff
+    git status
+    >&2 echo "Failed: PR checks are not up to date. Run 'cd pr-checks && python3 sync.py' to update"
+    exit 1
+fi
+echo "Success: PR checks are up to date"

github/codeql-action-v2/.github/workflows/test-codeql-bundle-all.yml

@@ -0,0 +1,53 @@
+name: 'PR Check - CodeQL Bundle All'
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  GO111MODULE: auto
+on:
+  push:
+    branches:
+    - main
+    - releases/v*
+  pull_request:
+    types:
+    - opened
+    - synchronize
+    - reopened
+    - ready_for_review
+  schedule:
+    - cron: '0 5 * * *'
+  workflow_dispatch: {}
+jobs:
+  test-codeql-bundle-all:
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+        - os: ubuntu-latest
+          version: nightly-latest
+    name: 'CodeQL Bundle All'
+    permissions:
+      contents: read
+      security-events: write
+    timeout-minutes: 45
+    runs-on: ${{ matrix.os }}
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Prepare test
+      id: prepare-test
+      uses: ./.github/actions/prepare-test
+      with:
+        version: ${{ matrix.version }}
+        use-all-platform-bundle: true
+    - id: init
+      uses: ./../action/init
+      with:
+        # We manually exclude Swift from the languages list here, as it is not supported on Ubuntu
+        languages: cpp,csharp,go,java,javascript,python,ruby 
+        tools: ${{ steps.prepare-test.outputs.tools-url }}
+    - name: Build code
+      shell: bash
+      run: ./build.sh
+    - uses: ./../action/analyze
+    env:
+      CODEQL_ACTION_TEST_MODE: true

github/codeql-action-v2/.github/workflows/update-bundle.yml

@@ -0,0 +1,91 @@
+name: Update default CodeQL bundle
+
+on:
+  release:
+    # From https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#release
+    # Note: The prereleased type will not trigger for pre-releases published
+    # from draft releases, but the published type will trigger. If you want a
+    # workflow to run when stable and pre-releases publish, subscribe to
+    # published instead of released and prereleased.
+    #
+    # From https://github.com/orgs/community/discussions/26281
+    # As a work around, in published type workflow,  you could add if condition
+    # to filter pre-release attribute.
+    types: [published]
+
+jobs:
+  update-bundle:
+    if: github.event.release.prerelease && startsWith(github.event.release.tag_name, 'codeql-bundle-')
+    runs-on: ubuntu-latest
+    steps:
+      - name: Dump environment
+        run: env
+
+      - name: Dump GitHub context
+        env:
+          GITHUB_CONTEXT: '${{ toJson(github) }}'
+        run: echo "$GITHUB_CONTEXT"
+
+      - uses: actions/checkout@v4
+
+      - name: Update git config
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Update bundle
+        uses: ./.github/actions/update-bundle
+
+      - name: Rebuild Action
+        run: npm run build
+
+      - name: Commit and push changes
+        env:
+          RELEASE_TAG: "${{ github.event.release.tag_name }}"
+        run: |
+          git checkout -b "update-bundle/$RELEASE_TAG"
+          git commit -am "Update default bundle to $RELEASE_TAG"
+          git push --set-upstream origin "update-bundle/$RELEASE_TAG"
+
+      - name: Open pull request
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          cli_version=$(jq -r '.cliVersion' src/defaults.json)
+          pr_url=$(gh pr create \
+            --title "Update default bundle to $cli_version" \
+            --body "This pull request updates the default CodeQL bundle, as used with \`tools: linked\` and on GHES, to $cli_version." \
+            --assignee "$GITHUB_ACTOR" \
+            --draft \
+          )
+          echo "CLI_VERSION=$cli_version" | tee -a "$GITHUB_ENV"
+          echo "PR_URL=$pr_url" | tee -a "$GITHUB_ENV"
+
+      - name: Create changelog note
+        shell: python
+        run: |
+          import os
+          import re
+
+          # Get the PR number from the PR URL.
+          pr_number = os.environ['PR_URL'].split('/')[-1]
+          changelog_note = f"- Update default CodeQL bundle version to {os.environ['CLI_VERSION']}. [#{pr_number}]({os.environ['PR_URL']})"
+
+          # If the "[UNRELEASED]" section starts with "no user facing changes", remove that line.
+          # Use perl to avoid having to escape the newline character.
+
+          with open('CHANGELOG.md', 'r') as f:
+              changelog = f.read()
+
+          changelog = changelog.replace('## [UNRELEASED]\n\nNo user facing changes.', '## [UNRELEASED]\n')
+
+          # Add the changelog note to the bottom of the "[UNRELEASED]" section.
+          changelog = re.sub(r'\n## (\d+\.\d+\.\d+)', f'{changelog_note}\n\n## \\1', changelog, count=1)
+
+          with open('CHANGELOG.md', 'w') as f:
+              f.write(changelog)
+
+      - name: Push changelog note
+        run: |
+          git commit -am "Add changelog note"
+          git push

github/codeql-action-v2/.github/workflows/update-dependencies.yml

@@ -0,0 +1,42 @@
+name: Update dependencies
+on:
+  pull_request_target:
+    types: [opened, synchronize, reopened, ready_for_review, labeled]
+
+jobs:
+  update:
+    name: Update dependencies
+    timeout-minutes: 45
+    runs-on: macos-latest
+    if: contains(github.event.pull_request.labels.*.name, 'Update dependencies') && (github.event.pull_request.head.repo.full_name == 'github/codeql-action')
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    - name: Remove PR label
+      env:
+        GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+        REPOSITORY: '${{ github.repository }}'
+        PR_NUMBER: '${{ github.event.pull_request.number }}'
+      run: |
+        gh api "repos/$REPOSITORY/issues/$PR_NUMBER/labels/Update%20dependencies" -X DELETE
+
+    - name: Push updated dependencies
+      env:
+        BRANCH: '${{ github.head_ref }}'
+        GITHUB_TOKEN: '${{ secrets.GITHUB_TOKEN }}'
+      run: |
+        git fetch origin "$BRANCH" --depth=1
+        git checkout "origin/$BRANCH"
+        .github/workflows/script/update-node-modules.sh update
+        if [ ! -z "$(git status --porcelain)" ]; then
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+          git add node_modules
+          git commit -am "Update checked-in dependencies"
+          git push origin "HEAD:$BRANCH"
+          echo "Pushed a commit to update the checked-in dependencies." \
+            "Please mark the PR as ready for review to trigger PR checks." |
+            gh pr comment --body-file - --repo github/codeql-action "${{ github.event.pull_request.number }}"
+          gh pr ready --undo --repo github/codeql-action "${{ github.event.pull_request.number }}"
+        fi

github/codeql-action-v2/.github/workflows/update-release-branch.yml

@@ -0,0 +1,141 @@
+name: Update release branch
+on:
+  # You can trigger this workflow via workflow dispatch to start a release.
+  # This will open a PR to update the latest release branch.
+  workflow_dispatch:
+
+  # When a release is complete this workflow will open up backport PRs to older release branches.
+  # NB while it will trigger on any release branch update, the backport job will not proceed for
+  # anything other than than releases/v{latest}
+  push:
+    branches:
+      - releases/*
+
+jobs:
+
+  prepare:
+    runs-on: ubuntu-latest
+    if: github.repository == 'github/codeql-action'
+    outputs:
+      version: ${{ steps.versions.outputs.version }}
+      major_version: ${{ steps.versions.outputs.major_version }}
+      latest_tag: ${{ steps.versions.outputs.latest_tag }}
+      backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}
+      backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # Need full history for calculation of diffs
+    - uses: ./.github/actions/release-initialise
+
+    - name: Get version tags
+      id: versions
+      run: |
+        VERSION="v$(jq '.version' -r 'package.json')"
+        echo "version=${VERSION}" >> $GITHUB_OUTPUT
+        MAJOR_VERSION=$(cut -d '.' -f1 <<< "${VERSION}")
+        echo "major_version=${MAJOR_VERSION}" >> $GITHUB_OUTPUT
+        LATEST_TAG=$(git tag --sort=-v:refname | grep -E '^v[0-9]+\.[0-9]+\.[0-9]+' | head -1)
+        echo "latest_tag=${LATEST_TAG}" >> $GITHUB_OUTPUT
+
+    - id: branches
+      name: Determine older release branches
+      uses: ./.github/actions/release-branches
+      with:
+        major_version: ${{ steps.versions.outputs.major_version }}
+        latest_tag: ${{ steps.versions.outputs.latest_tag }}
+
+    - name: debug logging
+      run: |
+        echo 'version: ${{ steps.versions.outputs.version }}'
+        echo 'major_version: ${{ steps.versions.outputs.major_version }}'
+        echo 'latest_tag: ${{ steps.versions.outputs.latest_tag }}'
+        echo 'backport_source_branch: ${{ steps.branches.outputs.backport_source_branch }}'
+        echo 'backport_target_branches: ${{ steps.branches.outputs.backport_target_branches }}'
+
+  update:
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    if: github.event_name == 'workflow_dispatch'
+    needs: [prepare]
+    env:
+      REF_NAME: "${{ github.ref_name }}"
+      REPOSITORY: "${{ github.repository }}"
+      MAJOR_VERSION: "${{ needs.prepare.outputs.major_version }}"
+      LATEST_TAG: "${{ needs.prepare.outputs.latest_tag }}"
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # Need full history for calculation of diffs
+    - uses: ./.github/actions/release-initialise
+
+    # when the workflow has been manually triggered on main,
+    # we know that we definitely want the release branch to exist
+    - name: Ensure release branch exists
+      run: |
+        echo "MAJOR_VERSION ${MAJOR_VERSION}"
+        RELEASE_BRANCH=releases/${MAJOR_VERSION}
+        if git checkout $RELEASE_BRANCH > /dev/null 2>&1; then
+            echo "Branch $RELEASE_BRANCH already exists"
+            echo ""
+        else
+            echo "Creating $RELEASE_BRANCH branch"
+            git checkout -b ${RELEASE_BRANCH} ${LATEST_TAG}
+            git push --set-upstream origin ${RELEASE_BRANCH}
+            git branch --show-current
+            echo ""
+        fi
+        echo "Returning to branch: ${REF_NAME}"
+        git checkout ${REF_NAME}
+
+    - name: Update current release branch
+      if: github.event_name == 'workflow_dispatch'
+      run: |
+        echo SOURCE_BRANCH=${REF_NAME}
+        echo TARGET_BRANCH=releases/${MAJOR_VERSION}
+        python .github/update-release-branch.py \
+          --github-token ${{ secrets.GITHUB_TOKEN }} \
+          --repository-nwo ${{ github.repository }} \
+          --source-branch '${{ env.REF_NAME }}' \
+          --target-branch 'releases/${{ env.MAJOR_VERSION }}' \
+          --is-primary-release \
+          --conductor ${GITHUB_ACTOR}
+
+  backport:
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    environment: Automation
+    needs: [prepare]
+    if: ${{ (github.event_name == 'push') && needs.prepare.outputs.backport_target_branches != '[]' }}
+    strategy:
+      fail-fast: false
+      matrix:
+        target_branch: ${{ fromJson(needs.prepare.outputs.backport_target_branches) }}
+    env:
+      SOURCE_BRANCH: ${{ needs.prepare.outputs.backport_source_branch }}
+      TARGET_BRANCH: ${{ matrix.target_branch }}
+    steps:
+    - name: Generate token
+      uses: actions/create-github-app-token@c1a285145b9d317df6ced56c09f525b5c2b6f755
+      id: app-token
+      with:
+        app-id: ${{ vars.AUTOMATION_APP_ID }}
+        private-key: ${{ secrets.AUTOMATION_PRIVATE_KEY }}
+
+    - name: Checkout
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # Need full history for calculation of diffs
+        token: ${{ steps.app-token.outputs.token }}
+    - uses: ./.github/actions/release-initialise
+
+    - name: Update older release branch
+      run: |
+        echo SOURCE_BRANCH=${SOURCE_BRANCH}
+        echo TARGET_BRANCH=${TARGET_BRANCH}
+        python .github/update-release-branch.py \
+          --github-token ${{ secrets.GITHUB_TOKEN }} \
+          --repository-nwo ${{ github.repository }} \
+          --source-branch ${SOURCE_BRANCH} \
+          --target-branch ${TARGET_BRANCH} \
+          --conductor ${GITHUB_ACTOR}

github/codeql-action-v2/.github/workflows/update-supported-enterprise-server-versions.yml

@@ -0,0 +1,65 @@
+name: Update Supported Enterprise Server Versions
+
+on:
+  schedule:
+    - cron: "0 0 * * *"
+  workflow_dispatch:
+
+jobs:
+  update-supported-enterprise-server-versions:
+    name: Update Supported Enterprise Server Versions
+    timeout-minutes: 45
+    runs-on: ubuntu-latest
+    if: ${{ github.repository == 'github/codeql-action' }}
+
+    steps:
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.7"
+      - name: Checkout CodeQL Action
+        uses: actions/checkout@v4
+      - name: Checkout Enterprise Releases
+        uses: actions/checkout@v4
+        with:
+          repository: github/enterprise-releases
+          ssh-key: ${{ secrets.ENTERPRISE_RELEASES_SSH_KEY }}
+          path: ${{ github.workspace }}/enterprise-releases/
+      - name: Update Supported Enterprise Server Versions
+        run: |
+          cd ./.github/workflows/update-supported-enterprise-server-versions/
+          python3 -m pip install pipenv
+          pipenv install
+          pipenv run ./update.py
+          rm --recursive "$ENTERPRISE_RELEASES_PATH"
+          npm run build
+        env:
+          ENTERPRISE_RELEASES_PATH: ${{ github.workspace }}/enterprise-releases/
+
+      - name: Update git config
+        run: |
+          git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+
+      - name: Commit changes and open PR
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          if [[ -z $(git status --porcelain) ]]; then
+            echo "No changes to commit"
+          else
+            git checkout -b update-supported-enterprise-server-versions
+            git add .
+            git commit --message "Update supported GitHub Enterprise Server versions"
+            git push origin update-supported-enterprise-server-versions
+
+            body="This PR updates the list of supported GitHub Enterprise Server versions, either because a new "
+            body+="version is about to be feature frozen, or because an old release has been deprecated."
+            body+=$'\n\n'
+            body+="If an old release has been deprecated, please follow the instructions in CONTRIBUTING.md to "
+            body+="deprecate the corresponding version of CodeQL."
+
+            gh pr create --draft \
+              --title "Update supported GitHub Enterprise Server versions" \
+              --body "$body"
+          fi

github/codeql-action-v2/.github/workflows/update-supported-enterprise-server-versions/Pipfile

@@ -0,0 +1,9 @@
+[[source]]
+name = "pypi"
+url = "https://pypi.org/simple"
+verify_ssl = true
+
+[dev-packages]
+
+[packages]
+semver = "*"

github/codeql-action-v2/.github/workflows/update-supported-enterprise-server-versions/Pipfile.lock

@@ -0,0 +1,27 @@
+{
+    "_meta": {
+        "hash": {
+            "sha256": "e3ba923dcb4888e05de5448c18a732bf40197e80fabfa051a61c01b22c504879"
+        },
+        "pipfile-spec": 6,
+        "requires": {},
+        "sources": [
+            {
+                "name": "pypi",
+                "url": "https://pypi.org/simple",
+                "verify_ssl": true
+            }
+        ]
+    },
+    "default": {
+        "semver": {
+            "hashes": [
+                "sha256:ced8b23dceb22134307c1b8abfa523da14198793d9787ac838e70e29e77458d4",
+                "sha256:fa0fe2722ee1c3f57eac478820c3a5ae2f624af8264cbdf9000c980ff7f75e3f"
+            ],
+            "index": "pypi",
+            "version": "==2.13.0"
+        }
+    },
+    "develop": {}
+}

github/codeql-action-v2/.github/workflows/update-supported-enterprise-server-versions/update.py

@@ -0,0 +1,51 @@
+#!/usr/bin/env python3
+import datetime
+import json
+import os
+import pathlib
+
+import semver
+
+_API_COMPATIBILITY_PATH = pathlib.Path(__file__).absolute().parents[3] / "src" / "api-compatibility.json"
+_ENTERPRISE_RELEASES_PATH = pathlib.Path(os.environ["ENTERPRISE_RELEASES_PATH"])
+_RELEASE_FILE_PATH = _ENTERPRISE_RELEASES_PATH / "releases.json"
+_FIRST_SUPPORTED_RELEASE = semver.VersionInfo.parse("2.22.0") # Versions older than this did not include Code Scanning.
+
+def main():
+	api_compatibility_data = json.loads(_API_COMPATIBILITY_PATH.read_text())
+
+	releases = json.loads(_RELEASE_FILE_PATH.read_text())
+
+	# Remove GHES version using a previous version numbering scheme.
+	if "11.10" in releases:
+		del releases["11.10"]
+
+	oldest_supported_release = None
+	newest_supported_release = semver.VersionInfo.parse(api_compatibility_data["maximumVersion"] + ".0")
+
+	for release_version_string, release_data in releases.items():
+		release_version = semver.VersionInfo.parse(release_version_string + ".0")
+		if release_version < _FIRST_SUPPORTED_RELEASE:
+			continue
+
+		if release_version > newest_supported_release:
+			feature_freeze_date = datetime.date.fromisoformat(release_data["feature_freeze"])
+			if feature_freeze_date < datetime.date.today() + datetime.timedelta(weeks=2):
+				newest_supported_release = release_version
+
+		if oldest_supported_release is None or release_version < oldest_supported_release:
+			end_of_life_date = datetime.date.fromisoformat(release_data["end"])
+			# The GHES version is not actually end of life until the end of the day specified by
+			# `end_of_life_date`. Wait an extra week to be safe.
+			is_end_of_life = datetime.date.today() > end_of_life_date + datetime.timedelta(weeks=1)
+			if not is_end_of_life:
+				oldest_supported_release = release_version
+
+	api_compatibility_data = {
+		"minimumVersion": f"{oldest_supported_release.major}.{oldest_supported_release.minor}",
+		"maximumVersion": f"{newest_supported_release.major}.{newest_supported_release.minor}",
+	}
+	_API_COMPATIBILITY_PATH.write_text(json.dumps(api_compatibility_data, sort_keys=True) + "\n")
+
+if __name__ == "__main__":
+	main()